Hg_chrom1_TN10mRNA_363
Organism: Heterodera glycines Gene Locus: chr1:4909229-4914020 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.759 | 1.03 | 0.72 | 1.688 | 0.932 | 1.136 | 0.472 | 1.049 | 1.709 | 1.355 | 1.095 | 2.194 | 2.202 | 0.762 | 1.047 | 0.833 | 0.955 | 0.53 | 0.897 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_348
|
— | — |
0.556
|
1.000
|
— |
1.000
|
— |
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKDNILAKCESFSMKRRVP
|
38-58
|
0.992
|
19-51
|
0.978
|
— | — |
0.000
|
— | — |
0.748
|
0.101
|
0.013
|
0.453
|
0.035
|
0.026
|
0.038
|
0.008
|
0.085
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001652
|
1.000
|
3.000
|
Hsc_gene_14806.t1;Hsc_gene_19190.t1;Hsc_gene_2777.t1
|
Hsc_gene_14806.t1;Hsc_gene_2777.t1
|
— |
P41999.1 Nuclear hormone receptor family member nhr-10 [Caenorhabditis elegans]
|
KAI1718737.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.901|GO:0005575_0.793|GO:0110165_0.793|GO:0005622_0.719|GO:0043226_0.693|GO:0009987_0.688|GO:0043229_0.676|GO:0065007_0.675|GO:0050789_0.660|GO:0003674_0.648|GO:0016020_0.609|GO:0050896_0.606|GO:0050794_0.584|GO:0008152_0.551|GO:0005488_0.550|GO:0044237_0.547|GO:0009058_0.529|GO:0044238_0.522|GO:0043227_0.514|GO:0043170_0.509|GO:0044249_0.504
|
IPR000536+171-413_217-391_221-380+|IPR001628+14-83_14-87_16-81_17-33_17-43_33-48_64-72_72-80+|IPR013088+12-114+|IPR035500+211-391_217-409+|IPR049636+17-81+|IPR050274+15-410+
|
SM00399+14-83+|SM00430+221-380+
|
PF00104+217-391+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+16-81+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+15-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-429
|
1lat_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
49390.950
|
8.523
|
16.500
|
24.009
|
13.287
|
44.522
|
55.478
|
14.452
|
9.557
|
42.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
69.025
|
31.471
|
78.296
|
27.075
|
6.659
|
3.230
|
7.412
|
3.862
|
318.186
|
4.095
|
138.705
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.083
|
— |
-1.423
|
-2.061
|
— | — | — |
1.084
|
5.644
|
-3.434
|
— | — | — |
No JSON data available for plots.