Hg_chrom1_TN10mRNA_366
Organism: Heterodera glycines Gene Locus: chr1:4938248-4942710 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.385 | 0.709 | 0.637 | 0.89 | 2.317 | 0.807 | 1.745 | 1.232 | 0.777 | 0.653 | 1.812 | 1.483 | 1.145 | 0.922 | 1.32 | 0.505 | 0.871 | 0.948 | 1.208 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_351
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.124
|
0.217
|
0.040
|
0.305
|
0.230
|
0.273
|
0.377
|
0.015
|
0.304
|
0.759
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001649
|
3.000
|
1.000
|
Hsc_gene_2768.t1
|
Hsc_gene_2768.t1;Hsc_gene_2768.t2
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
KAI1720450.1 lipase (class 3) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.870|GO:0005575_0.845|GO:0110165_0.843|GO:0003824_0.708|GO:0016020_0.699|GO:0005622_0.697|GO:0016787_0.692|GO:0016788_0.664|GO:0052689_0.650|GO:0043226_0.646|GO:0043229_0.630|GO:0008150_0.610|GO:0043227_0.554|GO:0005737_0.549|GO:0043231_0.537
|
IPR002921+215-348+|IPR029058+145-442_155-437+
|
— |
PF01764+215-348+Lipase_(class_3)
|
— |
PTHR45908+139-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
79-147
|
2.000
|
1-78;148-487
|
5ap9_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
55195.050
|
7.209
|
6.500
|
21.561
|
14.168
|
48.871
|
51.129
|
12.320
|
9.240
|
48.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
154.755
|
42.431
|
244.041
|
122.932
|
82.763
|
181.878
|
58.284
|
423.488
|
123.972
|
150.641
|
139.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.297
|
1.397
|
-0.882
|
-0.603
|
1.152
|
-1.634
|
1.116
|
-2.721
|
— | — | — | — | — |
No JSON data available for plots.