Hg_chrom1_TN10mRNA_37
Organism: Heterodera glycines Gene Locus: chr1:332443-336276 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.046 | 1.119 | 0.456 | 0.577 | 0.662 | 2.843 | 1.943 | 1.36 | 0.372 | 0.594 | 0.602 | 2.092 | 0.465 | 2.213 | 0.982 | 0.747 | 0.72 | 0.729 | 0.161 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_37
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KGARGHAGQPGKSGKH
|
— | — |
17-56
|
0.892
|
— | — |
0.080
|
— | — |
0.045
|
0.110
|
0.008
|
0.139
|
0.516
|
0.141
|
0.275
|
0.010
|
0.592
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002861
|
2.000
|
1.000
|
Hsc_gene_24117.t1
|
— | — | — |
KAH7706975.1 DPY-9 protein [Aphelenchus avenae]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+8-60_11-59+|IPR008160+153-210_222-278+|IPR050632+15-287+
|
SM01088+8-60+
|
PF01391+153-210_222-278+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-59+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+15-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-478
|
1.000
|
1-56
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
49512.150
|
9.532
|
17.500
|
17.992
|
6.276
|
43.515
|
56.485
|
11.506
|
6.485
|
60.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
953.519
|
121.446
|
34.733
|
12.002
|
1263.823
|
691.966
|
69.424
|
165.863
|
12.439
|
3277.596
|
1878.243
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.034
|
-3.476
|
-1.426
|
6.686
|
-0.853
|
-3.310
|
-2.187
|
-1.110
|
-8.174
|
— | — | — | — |
No JSON data available for plots.