Hg_chrom1_TN10mRNA_370
Organism: Heterodera glycines Gene Locus: chr1:5042977-5044112 Feature type: polypeptideProtein Sequence
Length: 97
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.599 | 0.48 | 0.375 | 0.355 | 1.375 | 1.057 | 0.614 | 1.546 | 1.833 | 1.672 | 0.937 | 2.426 | 3.723 | 0.595 | 1.262 | 0.736 | 0.845 | 0.781 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_355
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
10-60
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.384
|
0.292
|
0.067
|
0.434
|
0.046
|
0.093
|
0.106
|
0.109
|
0.040
|
0.409
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001653
|
3.000
|
1.000
|
Hsc_gene_13941.t1
|
— | — |
Q8N0Z2.1 Actin-binding Rho-activating protein [Homo sapiens]
|
KAK5973931.1 Actin-binding Rho-activating protein [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0035025
|
GO:0005575_0.938|GO:0110165_0.931|GO:0005622_0.672|GO:0005737_0.651|GO:0043226_0.632|GO:0043229_0.614
|
IPR026111+50-93+|IPR027817+15-82_50-82+|IPR038095+41-91+
|
SM01283+15-82+
|
PF14705+50-82+Costars
|
— |
PTHR22739+50-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-97
|
2krh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
11312.420
|
9.258
|
3.500
|
25.773
|
16.495
|
42.268
|
57.732
|
15.464
|
10.309
|
34.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
1.677
|
0.993
|
2.219
|
0.865
|
1.277
|
2.263
|
0.000
|
1.380
|
1.382
|
2.928
|
2.265
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-5.329
|
— |
-4.480
|
— | — | — | — | — |
No JSON data available for plots.