Hg_chrom1_TN10mRNA_371
Organism: Heterodera glycines Gene Locus: chr1:5043837-5047548 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.219 | 1.655 | 1.158 | 0.904 | 1.248 | 1.056 | 0.669 | 0.562 | 1.082 | 1.113 | 1.078 | 1.983 | 0.936 | 0.792 | 2.14 | 0.321 | 1.105 | 0.34 | 0.288 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_356
|
— | — |
1.111
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.280
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNNKNNDSNGMKARLK,KARLKSWAKRAKNERRGALKELRKGAKGMANAYAERQRKVRRERGEKTKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.815
|
0.108
|
0.016
|
0.277
|
0.069
|
0.020
|
0.035
|
0.003
|
0.042
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000724
|
4.000
|
2.000
|
Hsc_gene_13938.t1;Hsc_gene_13938.t2
|
Hsc_gene_13938.t1;Hsc_gene_13938.t2
|
— | — |
KAH7720101.1 Protein Y48G1A.4 [Aphelenchus avenae]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032040
|
— |
IPR007276+36-225_74-225+
|
— |
PF04147+36-225+Nop14-like_family
|
— |
PTHR23183+74-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;113-222
|
2.000
|
3-112;223-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
30395.610
|
9.628
|
11.500
|
32.584
|
6.742
|
52.809
|
47.191
|
18.727
|
13.858
|
47.566
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
59.865
|
72.883
|
80.379
|
74.596
|
49.376
|
72.105
|
74.897
|
80.343
|
25.465
|
53.591
|
41.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.624
|
0.558
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.