Hg_chrom1_TN10mRNA_378
Organism: Heterodera glycines Gene Locus: chr1:5221129-5225367 Feature type: polypeptideProtein Sequence
Length: 589
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.579 | 1.08 | 0.937 | 1.387 | 0.653 | 0.586 | 0.849 | 1.245 | 1.147 | 1.209 | 1.298 | 1.792 | 0.62 | 0.866 | 1.164 | 0.584 | 0.9 | 1.045 | 0.849 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_363
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.156
|
0.030
|
0.566
|
0.154
|
0.200
|
0.060
|
0.015
|
0.148
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_25683.t1
|
— | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.737|GO:0110165_0.732|GO:0005622_0.673|GO:0008150_0.643|GO:0005737_0.607|GO:0043226_0.589|GO:0043229_0.578|GO:0009987_0.556
|
IPR000210+12-120_21-100_21-131+|IPR002083+298-429_299-432_300-410_302-429_450-584_452-565_454-577+|IPR008974+290-437_438-589+|IPR011333+2-121_6-120+|IPR011705+135-245_138-222+
|
SM00061+300-410_452-565+|SM00225+21-131+|SM00875+135-245+
|
PF00651+12-120+BTB/POZ_domain|PF07707+138-222+BTB_And_C-terminal_Kelch|PF22486+302-429_454-577+MATH_domain
|
— |
PTHR45774+9-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-589
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
66950.090
|
5.477
|
-7.000
|
28.183
|
12.394
|
49.236
|
50.764
|
13.922
|
14.261
|
48.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
189.269
|
104.564
|
161.634
|
147.693
|
117.910
|
95.734
|
116.825
|
204.323
|
468.657
|
120.804
|
269.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.398
|
0.361
|
— |
-0.356
|
-0.287
|
— |
0.989
|
-0.668
|
— | — | — | — | — |
No JSON data available for plots.