Hg_chrom1_TN10mRNA_38
Organism: Heterodera glycines Gene Locus: chr1:337980-348385 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.708 | 0.922 | 0.49 | 1.251 | 1.352 | 0.845 | 1.116 | 0.676 | 1.727 | 0.522 | 1.312 | 0.62 | 1.17 | 1.904 | 0.985 | 0.632 | 1.291 | 0.624 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_38
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRCIVLLGANGVGRRTLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.416
|
0.035
|
0.571
|
0.246
|
0.305
|
0.188
|
0.031
|
0.393
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
D3ZAA9.2 MAGUK p55 subfamily member 2 [Rattus norvegicus]
|
KAI1704426.1 guanylate kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.845|GO:0110165_0.821|GO:0008150_0.778|GO:0009987_0.692|GO:0016020_0.657|GO:0003674_0.597|GO:0043226_0.586|GO:0005622_0.583
|
IPR001452+210-279+|IPR008144+287-469+|IPR008145+286-472_287-470+|IPR027417+279-484_284-480+|IPR036028+208-279+|IPR050716+276-483+
|
SM00072+286-472+
|
PF00625+287-470+Guanylate_kinase
|
— |
PTHR23122+276-483+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68
|
1.000
|
69-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
55294.270
|
7.707
|
6.500
|
27.586
|
7.911
|
46.653
|
53.347
|
15.010
|
12.576
|
48.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
681.881
|
1123.625
|
1644.461
|
622.373
|
245.675
|
190.927
|
139.371
|
522.157
|
314.712
|
1063.976
|
742.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.320
|
-0.990
|
-1.293
|
-1.373
|
-0.349
|
-0.445
|
1.348
|
-1.764
|
— | — | — | — | — |
No JSON data available for plots.