Hg_chrom1_TN10mRNA_386
Organism: Heterodera glycines Gene Locus: chr1:5297654-5298769 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 0.657 | 1.746 | 1.364 | 1.789 | 1.159 | 0.605 | 1.695 | 0.879 | 1.374 | 0.257 | 1.329 | 1.883 | 1.086 | 1.499 | 0.726 | 0.463 | 0.942 | 0.0 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_370
|
— | — |
4.444
|
5.000
|
5.000
|
2.000
|
3.000
|
5.000
|
5.000
|
5.000
|
5.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.566
|
0.016
|
0.592
|
0.067
|
0.141
|
0.063
|
0.055
|
0.102
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000360
|
1.000
|
7.000
|
Hsc_gene_11164.t1;Hsc_gene_1489.t1;Hsc_gene_17777.t1;Hsc_gene_20553.t1;Hsc_gene_2058.t1;Hsc_gene_2058.t2;Hsc_gene_22051.t1
|
— | — | — |
KAI3419441.1 hypothetical protein GPALN_006685 [Globodera pallida]
|
KAG1114744
|
0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;174-177
|
1.000
|
23-173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.971
|
20422.840
|
4.213
|
-17.000
|
32.768
|
12.994
|
48.023
|
51.977
|
12.429
|
20.339
|
46.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
776.472
|
4.894
|
6.731
|
6.389
|
9.165
|
8.412
|
6.701
|
23.965
|
41.804
|
3340.867
|
1926.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1.409
|
-1.695
|
-6.455
|
— |
-8.215
|
— | — |
No JSON data available for plots.