Hg_chrom1_TN10mRNA_389
Organism: Heterodera glycines Gene Locus: chr1:5398003-5399054 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.949 | 0.538 | 1.471 | 0.199 | 2.312 | 1.037 | 1.17 | 0.0 | 0.257 | 0.312 | 3.065 | 2.04 | 0.0 | 1.0 | 0.0 | 0.578 | 0.474 | 0.788 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_372
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_15002;Hsc_gene_15003;Hsc_gene_15018;Hsc_gene_15974;Hsc_gene_16080;Hsc_gene_21100;Hsc_gene_14996;Hsc_gene_14977;Hsc_gene_15008;Hsc_gene_24982;Hsc_gene_23186;Hsc_gene_8449;Hsc_gene_8453
|
— | — |
21-Not_Clustered
|
0.700
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
AVKKDGKKGAVASPAKGKASPKGASPAKGKAAKGGKKDAKKAGKKDGKVKKEKKEKPAKKAGKGKDAAKKDKTKDKKAPAAAKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.262
|
0.052
|
0.046
|
0.120
|
0.197
|
0.014
|
0.052
|
0.009
|
0.044
|
0.721
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002910
|
2.000
|
1.000
|
Hsc_gene_3587.t1
|
Hsc_gene_14977.t1;Hsc_gene_15008.t1;Hsc_gene_16080.t1;Hsc_gene_21100.t1;Hsc_gene_24982.t1
|
— | — |
QPO14705.1 effector protein GLAND4, partial [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-173
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
18049.190
|
5.106
|
-3.000
|
42.197
|
0.000
|
55.491
|
44.509
|
20.231
|
21.965
|
54.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
8600.638
|
3.328
|
1.548
|
4161.062
|
4394.350
|
338.268
|
523.392
|
81.094
|
6313.814
|
29328.789
|
19465.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
10.144
|
11.515
|
— |
-3.685
|
0.642
|
-2.179
|
2.839
|
— | — | — | — | — |
No JSON data available for plots.