Hg_chrom1_TN10mRNA_391
Organism: Heterodera glycines Gene Locus: chr1:5426570-5429463 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.299 | 0.677 | 0.459 | 1.285 | 1.091 | 0.57 | 1.463 | 1.596 | 1.33 | 1.249 | 1.877 | 1.773 | 0.921 | 0.868 | 0.76 | 0.349 | 1.128 | 1.227 | 0.939 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.534
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.194
|
0.471
|
0.046
|
0.576
|
0.353
|
0.521
|
0.405
|
0.015
|
0.281
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005649
|
1.000
|
1.000
|
Hsc_gene_3589.t1
|
Hsc_gene_3589.t1
|
— |
Q9UDX3.1 SEC14-like protein 4 [Homo sapiens]
|
KAH7732161.1 Protein C34C12.6 [Aphelenchus avenae]
|
No
|
-0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.893|GO:0110165_0.891|GO:0005622_0.836|GO:0016020_0.830|GO:0005737_0.807|GO:0043226_0.786|GO:0043229_0.776|GO:0043227_0.759|GO:0043231_0.747|GO:0005829_0.612|GO:0005634_0.590|GO:0005576_0.572|GO:0031982_0.571|GO:0031974_0.569|GO:0043233_0.569|GO:0070013_0.569|GO:0005615_0.565|GO:0031981_0.560|GO:0043230_0.560|GO:0065010_0.560|GO:0070062_0.560|GO:1903561_0.560|GO:0005654_0.552
|
IPR001251+80-244_96-247_115-241+|IPR036865+8-278_94-242+|IPR053302+8-320+
|
SM00516+80-244+
|
PF00650+115-241+CRAL/TRIO_domain
|
— |
PTHR47159+8-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
43476.630
|
8.557
|
9.500
|
26.862
|
14.096
|
44.149
|
55.851
|
15.426
|
11.436
|
41.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
336.482
|
142.205
|
288.192
|
210.691
|
212.582
|
269.036
|
442.735
|
307.679
|
424.282
|
451.476
|
439.821
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
0.430
|
-0.343
|
— |
0.354
|
0.725
|
— |
0.661
|
— | — | — | — | — |
No JSON data available for plots.