Hg_chrom1_TN10mRNA_393
Organism: Heterodera glycines Gene Locus: chr1:5433467-5443450 Feature type: polypeptideProtein Sequence
Length: 720
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.163 | 0.909 | 0.814 | 0.509 | 1.638 | 1.24 | 0.417 | 1.235 | 1.126 | 0.4 | 1.716 | 1.273 | 1.522 | 1.049 | 0.694 | 0.888 | 1.01 | 1.175 | 1.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_376
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.125
|
0.027
|
0.021
|
0.251
|
0.203
|
0.420
|
0.253
|
0.030
|
0.827
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q0KHY3.2 Protein mesh [Drosophila melanogaster]
|
KAI1704146.1 AMOP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007160
|
GO:0008150_0.957|GO:0005575_0.899|GO:0009987_0.895|GO:0110165_0.891|GO:0030054_0.628|GO:0003674_0.595|GO:0005911_0.561|GO:0070161_0.561|GO:0043296_0.540|GO:0071944_0.539|GO:0065007_0.530|GO:0016020_0.528|GO:0005886_0.515|GO:0050789_0.510
|
IPR000436+515-588+|IPR003886+211-374_212-376_224-372+|IPR051495+71-489+
|
SM00539+212-376+
|
PF06119+224-372+Nidogen-like
|
— |
PTHR13802+71-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
643-720
|
1.000
|
1-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
79201.520
|
6.704
|
1.000
|
16.667
|
11.528
|
38.333
|
61.667
|
8.611
|
8.056
|
54.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
721.040
|
73.104
|
24.735
|
18.844
|
14.351
|
25.984
|
94.105
|
11.053
|
80.334
|
2995.982
|
1746.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.797
|
-2.094
|
— | — |
0.866
|
1.867
|
-1.347
|
3.236
|
-3.097
|
— |
-5.305
|
— | — |
No JSON data available for plots.