Hg_chrom1_TN10mRNA_395
Organism: Heterodera glycines Gene Locus: chr1:5447913-5449301 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.443 | 1.188 | 0.796 | 0.252 | 0.973 | 1.123 | 1.564 | 1.46 | 1.135 | 0.69 | 1.217 | 1.717 | 1.419 | 1.263 | 0.745 | 1.356 | 0.479 | 0.221 | 0.561 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_378
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_1943;Hsc_gene_11688;Hsc_gene_1514;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_17216;Hsc_gene_19127;Hsc_gene_24308
|
Hsc_gene_1516
|
— |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKGGRGGPPKGEKPTGMPPTGSPPMEREKRSLGKGNAKKRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.800
|
0.122
|
0.048
|
0.341
|
0.053
|
0.074
|
0.056
|
0.007
|
0.116
|
0.438
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000083
|
13.000
|
3.000
|
Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1943.t1
|
Hsc_gene_1513.t1;Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1516.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1
|
— | — |
QPO14706.1 effector protein GLAND5, partial [Heterodera glycines]
|
MBT9384100
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59
|
1.000
|
60-137
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
14321.020
|
9.119
|
4.000
|
24.818
|
8.759
|
46.715
|
53.285
|
14.599
|
10.219
|
56.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
21.046
|
0.000
|
1.085
|
0.757
|
0.319
|
0.639
|
3.846
|
33.343
|
1.382
|
76.043
|
44.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.464
|
— | — | — | — |
2.606
|
5.626
|
-2.975
|
-6.026
|
— |
-7.692
|
— | — |
No JSON data available for plots.