Hg_chrom1_TN10mRNA_4
Organism: Heterodera glycines Gene Locus: chr1:103500-115395 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.819 | 0.491 | 0.896 | 0.405 | 0.704 | 1.204 | 0.475 | 2.934 | 0.782 | 1.491 | 0.356 | 0.967 | 1.565 | 1.49 | 1.629 | 1.107 | 1.116 | 1.316 | 1.264 | 0.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_4
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.202
|
0.034
|
0.425
|
0.117
|
0.061
|
0.044
|
0.056
|
0.143
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005549
|
1.000
|
1.000
|
Hsc_gene_26041.t1
|
Hsc_gene_26041.t1;Hsc_gene_26072.t1
|
— |
Q20745.2 Nuclear migration and anchoring protein unc-84 [Caenorhabditis elegans]
|
KAI1716751.1 nuclear migration and anchoring protein unc-84 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0005575_0.906|GO:0110165_0.906|GO:0009987_0.898|GO:0016020_0.860|GO:0005622_0.806|GO:0043226_0.767|GO:0071944_0.759|GO:0043229_0.756|GO:0003674_0.753|GO:0051179_0.750|GO:0005886_0.748|GO:0043227_0.742|GO:0043231_0.724|GO:0005737_0.714|GO:0051641_0.703|GO:0005488_0.674|GO:0051234_0.632|GO:0005515_0.630|GO:0006810_0.629|GO:0005773_0.615|GO:0012505_0.607|GO:0005634_0.601|GO:0051649_0.577|GO:0046907_0.569|GO:0051640_0.565|GO:0051656_0.565|GO:0007097_0.561|GO:0051647_0.561|GO:0031967_0.556|GO:0005635_0.546
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-107
|
2.000
|
1-38;108-426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
48251.310
|
8.937
|
17.500
|
25.352
|
14.319
|
46.714
|
53.286
|
16.197
|
9.155
|
50.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
2051.875
|
5.204
|
29.750
|
15.163
|
12.302
|
10.610
|
8.736
|
8.137
|
10.119
|
8935.652
|
5110.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.283
|
1.405
|
-0.861
|
— | — | — | — | — |
-9.892
|
— |
-9.215
|
— | — |
No JSON data available for plots.