Hg_chrom1_TN10mRNA_403
Organism: Heterodera glycines Gene Locus: chr1:5572060-5584232 Feature type: polypeptideProtein Sequence
Length: 1,340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.874 | 0.638 | 0.206 | 0.92 | 2.564 | 0.808 | 1.269 | 0.995 | 0.928 | 0.746 | 2.502 | 0.954 | 1.048 | 0.807 | 1.429 | 0.918 | 0.577 | 0.459 | 1.119 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRRP,KKKKK,GPSRPRRK,KRAGRILQRIAGKNKKY,KKYNPFGYWIIHICKNRRS
|
— | — | — | — | — |
0.847
|
0.088
|
0.000
|
— |
0.580
|
0.088
|
0.001
|
0.675
|
0.062
|
0.175
|
0.079
|
0.014
|
0.098
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001043
|
3.000
|
2.000
|
Hsc_gene_3602.t1;Hsc_gene_3602.t2
|
— | — | — |
KAI3416433.1 hypothetical protein GPALN_005968 [Globodera pallida]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
— |
IPR037104+974-1141+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-648;885-937;1200-1340
|
3.000
|
1-38;649-884;938-1199
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
150092.310
|
7.472
|
15.000
|
20.448
|
10.373
|
54.104
|
45.896
|
11.418
|
9.030
|
49.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2642.536
|
6.712
|
855.037
|
1073.707
|
272.774
|
23.984
|
33.030
|
47.168
|
11697.071
|
1921.136
|
6110.823
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.762
|
7.180
|
0.435
|
-2.008
|
-3.492
|
— | — | — |
2.499
|
-3.267
|
-2.578
|
— | — |