Hg_chrom1_TN10mRNA_405
Organism: Heterodera glycines Gene Locus: chr1:5602198-5606410 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.52 | 1.081 | 1.127 | 1.424 | 1.578 | 0.53 | 0.635 | 1.377 | 1.415 | 0.744 | 1.408 | 1.519 | 1.243 | 0.563 | 1.405 | 0.688 | 0.734 | 0.939 | 1.192 | 1.721 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_387
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.710
|
0.322
|
0.042
|
0.405
|
0.181
|
0.057
|
0.067
|
0.014
|
0.203
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000727
|
4.000
|
2.000
|
Hsc_gene_3213.t1;Hsc_gene_3213.t2
|
Hsc_gene_4100.t1;Hsc_gene_806.t1;Hsc_gene_807.t1;Hsc_gene_9532.t1;Hsc_gene_9533.t1
|
— | — |
KAI3419612.1 hypothetical protein GPALN_004048 [Globodera pallida]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+440-519+|IPR043502+356-541+
|
— |
PF03175+440-519+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+357-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
68449.140
|
7.689
|
11.000
|
34.596
|
14.630
|
50.602
|
49.398
|
18.933
|
15.663
|
43.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
1221.744
|
11.051
|
18.278
|
10.487
|
8.247
|
10.060
|
7.919
|
12.504
|
338.601
|
5061.722
|
3037.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.690
|
— | — | — | — | — |
-3.999
|
-4.847
|
-8.702
|
— | — |
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