Hg_chrom1_TN10mRNA_407
Organism: Heterodera glycines Gene Locus: chr1:5638211-5640368 Feature type: polypeptideProtein Sequence
Length: 572
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 1.789 | 0.731 | 0.482 | 0.583 | 2.69 | 0.645 | 1.923 | 0.894 | 1.252 | 0.079 | 1.543 | 1.408 | 1.984 | 1.463 | 0.849 | 1.06 | 0.715 | 0.403 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_389
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRNNANAGRGRGRGGGTRRRA
|
— | — |
68-121
|
0.937
|
— | — |
0.000
|
— | — |
0.616
|
0.162
|
0.001
|
0.737
|
0.108
|
0.024
|
0.065
|
0.086
|
0.053
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001036
|
2.000
|
3.000
|
Hsc_gene_25820.t1;Hsc_gene_3971.t1;Hsc_gene_3972.t1
|
— | — | — |
XP_056865579.1 E3 ubiquitin-protein ligase RING1-like isoform X2 [Raphanus sativus]
|
KAF9614614
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.967|GO:0003674_0.875|GO:0008152_0.714|GO:0044238_0.710|GO:0003824_0.695|GO:0140096_0.695|GO:0016740_0.679|GO:0004842_0.674|GO:0016746_0.674|GO:0016755_0.674|GO:0019787_0.674|GO:0050896_0.661|GO:0043170_0.634|GO:0009987_0.631|GO:0005575_0.602|GO:0110165_0.598|GO:0042221_0.561|GO:0019538_0.548|GO:0065007_0.546|GO:0050789_0.539|GO:0005622_0.535|GO:1901700_0.527|GO:0016020_0.523|GO:0050794_0.523|GO:0036211_0.518|GO:0043412_0.518
|
IPR001841+520-562_521-562+|IPR013083+507-571+|IPR051834+297-562+
|
SM00184+521-562+
|
PF13639+520-562+Ring_finger_domain
|
— |
PTHR45931+297-562+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
281-494
|
2.000
|
1-280;495-572
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
64437.510
|
7.803
|
12.000
|
19.056
|
10.839
|
49.650
|
50.350
|
11.538
|
7.517
|
51.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
717.345
|
4.282
|
15.558
|
9.142
|
5.191
|
5.809
|
2.430
|
19.449
|
83.587
|
3052.495
|
1780.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.630
|
0.956
|
— | — | — | — |
1.639
|
-2.858
|
-5.309
|
— |
-8.847
|
— | — |
No JSON data available for plots.