Hg_chrom1_TN10mRNA_413
Organism: Heterodera glycines Gene Locus: chr1:5732039-5734935 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.004 | 1.243 | 1.364 | 1.259 | 2.49 | 0.471 | 1.439 | 1.359 | 0.972 | 0.545 | 2.539 | 0.699 | 0.899 | 0.661 | 1.079 | 1.061 | 0.818 | 0.553 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_393
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.679
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.651
|
0.174
|
0.038
|
0.505
|
0.060
|
0.033
|
0.050
|
0.056
|
0.201
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000722
|
6.000
|
0.000
|
0.000
|
Hsc_gene_21356.t1
|
— | — |
KAI3407413.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.919|GO:0005622_0.840|GO:0043226_0.760|GO:0005737_0.754|GO:0043229_0.743|GO:0043228_0.622|GO:0043232_0.619|GO:0099080_0.588|GO:0035770_0.553|GO:0036464_0.553|GO:0000932_0.547|GO:0016020_0.542|GO:0003674_0.525|GO:0005488_0.525|GO:0005515_0.504
|
IPR011705+26-72+
|
— |
PF07707+26-72+BTB_And_C-terminal_Kelch
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-278
|
1.000
|
1-135
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
30906.730
|
4.332
|
-17.000
|
24.101
|
7.194
|
52.158
|
47.842
|
9.712
|
14.388
|
51.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
56.420
|
16.399
|
21.198
|
14.439
|
8.698
|
9.236
|
22.330
|
16.297
|
134.630
|
105.140
|
117.779
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.284
|
— | — | — | — | — | — | — |
No JSON data available for plots.