Hg_chrom1_TN10mRNA_414
Organism: Heterodera glycines Gene Locus: chr1:5746770-5747715 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.57 | 1.254 | 1.07 | 0.507 | 1.225 | 0.88 | 0.642 | 0.49 | 1.743 | 0.861 | 1.263 | 0.288 | 3.268 | 0.471 | 1.2 | 1.12 | 1.045 | 0.743 | 0.377 | 0.721 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_394
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
41-68
|
0.888
|
— | — | — | — |
0.000
|
— | — |
0.452
|
0.243
|
0.022
|
0.519
|
0.253
|
0.125
|
0.036
|
0.078
|
0.198
|
0.581
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000728
|
3.000
|
3.000
|
Hsc_gene_21503.t1;Hsc_gene_8488.t1;Hsc_gene_8490.t1
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAF9351791
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.912|GO:0009987_0.533
|
IPR001870+7-194+|IPR003877+70-193_73-191+|IPR013320+14-194+|IPR043136+3-201+|IPR044736+55-190+|IPR050618+27-191+
|
SM00449+70-193+
|
PF00622+73-191+SPRY_domain
|
— |
PTHR12864+27-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
23594.810
|
8.245
|
3.000
|
28.431
|
15.686
|
51.471
|
48.529
|
15.196
|
13.235
|
44.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.753
|
0.000
|
0.282
|
0.000
|
0.000
|
0.000
|
0.000
|
0.280
|
5.529
|
3.312
|
4.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.