Hg_chrom1_TN10mRNA_415
Organism: Heterodera glycines Gene Locus: chr1:5885508-5888654 Feature type: polypeptideProtein Sequence
Length: 994
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.334 | 0.915 | 0.694 | 0.989 | 1.96 | 0.455 | 1.61 | 1.095 | 1.305 | 1.113 | 1.539 | 0.894 | 1.103 | 1.355 | 1.078 | 0.808 | 0.534 | 0.696 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_395
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRHQRNKHQATIVRKDAK
|
— | — |
13-34
|
0.970
|
— | — |
0.000
|
— | — |
0.587
|
0.329
|
0.068
|
0.483
|
0.149
|
0.098
|
0.132
|
0.059
|
0.133
|
0.318
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000005
|
1.000
|
92.000
|
Hsc_gene_10898.t1;Hsc_gene_10899.t1;Hsc_gene_10900.t1;Hsc_gene_11091.t1;Hsc_gene_11126.t1;Hsc_gene_11127.t1;Hsc_gene_11128.t1;Hsc_gene_11129.t1;Hsc_gene_11178.t1;Hsc_gene_11179.t1;Hsc_gene_11180.t1;Hsc_gene_11517.t1;Hsc_gene_11518.t1;Hsc_gene_11519.t1;Hsc_gene_12105.t1;Hsc_gene_12208.t1;Hsc_gene_12209.t1;Hsc_gene_12210.t1;Hsc_gene_14330.t1;Hsc_gene_14330.t2;Hsc_gene_14544.t1;Hsc_gene_15132.t1;Hsc_gene_15133.t1;Hsc_gene_16093.t1;Hsc_gene_16094.t1;Hsc_gene_16099.t1;Hsc_gene_16100.t1;Hsc_gene_16260.t1;Hsc_gene_16875.t1;Hsc_gene_16876.t1;Hsc_gene_17111.t1;Hsc_gene_17520.t1;Hsc_gene_17521.t1;Hsc_gene_18943.t1;Hsc_gene_1919.t1;Hsc_gene_1920.t1;Hsc_gene_1921.t1;Hsc_gene_1922.t1;Hsc_gene_19626.t1;Hsc_gene_19627.t1;Hsc_gene_19748.t1;Hsc_gene_20847.t1;Hsc_gene_21076.t1;Hsc_gene_22023.t1;Hsc_gene_22102.t1;Hsc_gene_22103.t1;Hsc_gene_2267.t1;Hsc_gene_22917.t1;Hsc_gene_23610.t1;Hsc_gene_23611.t1;Hsc_gene_2367.t1;Hsc_gene_2368.t1;Hsc_gene_24279.t1;Hsc_gene_24528.t1;Hsc_gene_24529.t1;Hsc_gene_24531.t1;Hsc_gene_24532.t1;Hsc_gene_24542.t1;Hsc_gene_24543.t1;Hsc_gene_24544.t1;Hsc_gene_24545.t1;Hsc_gene_24741.t1;Hsc_gene_24936.t1;Hsc_gene_25663.t1;Hsc_gene_25664.t1;Hsc_gene_25734.t1;Hsc_gene_25735.t1;Hsc_gene_25757.t1;Hsc_gene_25931.t1;Hsc_gene_26038.t1;Hsc_gene_26039.t1;Hsc_gene_26467.t1;Hsc_gene_26624.t1;Hsc_gene_2760.t1;Hsc_gene_2852.t1;Hsc_gene_2868.t1;Hsc_gene_2869.t1;Hsc_gene_2987.t1;Hsc_gene_3279.t1;Hsc_gene_4079.t1;Hsc_gene_4080.t1;Hsc_gene_4438.t1;Hsc_gene_520.t1;Hsc_gene_521.t1;Hsc_gene_6045.t1;Hsc_gene_740.t1;Hsc_gene_7851.t1;Hsc_gene_7852.t1;Hsc_gene_8876.t1;Hsc_gene_8877.t1;Hsc_gene_9609.t1;Hsc_gene_9610.t1
|
Hsc_gene_16260.t1;Hsc_gene_21076.t1;Hsc_gene_24279.t1;Hsc_gene_24528.t1;Hsc_gene_24531.t1;Hsc_gene_24936.t1;Hsc_gene_740.t1
|
— | — |
KAI3409782.1 hypothetical protein GPALN_016303 [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR005312+230-362+|IPR008737+608-757+
|
— |
PF03564+230-362+Protein_of_unknown_function_(DUF1759)|PF05585+608-757+Putative_peptidase_(DUF1758)
|
— |
PTHR22955+141-840+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;403-473;770-873;963-994
|
3.000
|
65-402;474-769;874-962
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
112745.400
|
9.722
|
46.000
|
28.169
|
8.853
|
54.024
|
45.976
|
17.203
|
10.966
|
46.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
129.493
|
1.933
|
2.004
|
1.543
|
0.078
|
0.746
|
0.101
|
0.962
|
0.000
|
563.769
|
322.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-4.153
|
— | — | — | — |
-9.949
|
— |
-12.293
|
— | — |
No JSON data available for plots.