Hg_chrom1_TN10mRNA_428
Organism: Heterodera glycines Gene Locus: chr1:6408117-6409274 Feature type: polypeptideProtein Sequence
Length: 78
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.298 | 0.466 | 4.421 | 0.641 | 0.986 | 0.916 | 2.564 | 0.0 | 1.213 | 1.36 | 0.754 | 0.712 | 1.233 | 0.523 | 0.733 | 0.631 | 1.36 | 3.945 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_408
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.668
|
0.288
|
0.044
|
0.561
|
0.089
|
0.039
|
0.065
|
0.082
|
0.070
|
0.517
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002925
|
2.000
|
1.000
|
Hsc_gene_15617.t1
|
— | — | — |
NXR30227.1 GAK5 protein [Zosterops hypoxanthus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0005575_0.906|GO:0110165_0.897|GO:0003674_0.818|GO:0005488_0.813|GO:0005622_0.736|GO:0016020_0.722|GO:0043226_0.683|GO:0043229_0.661|GO:0097159_0.658|GO:0003676_0.656|GO:0043227_0.653|GO:0003723_0.650|GO:0043231_0.637|GO:0043228_0.569|GO:0043232_0.569|GO:0005634_0.567|GO:0031974_0.559|GO:0043233_0.559|GO:0070013_0.558|GO:0031981_0.549|GO:0005654_0.548|GO:0005730_0.540
|
IPR001878+7-23_8-22_25-41+|IPR036875+6-41+
|
SM00343+7-23_25-41+
|
PF00098+8-22+Zinc_knuckle
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-78
|
6t64_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
8649.200
|
8.178
|
6.000
|
23.077
|
14.103
|
37.179
|
62.821
|
16.667
|
6.410
|
56.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
24.864
|
0.313
|
0.157
|
1.365
|
1.730
|
1.510
|
0.205
|
3.006
|
0.514
|
105.287
|
60.384
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
3.290
|
— | — | — | — |
-3.737
|
— | — | — | — | — |
No JSON data available for plots.