Hg_chrom1_TN10mRNA_435
Organism: Heterodera glycines Gene Locus: chr1:6628413-6643563 Feature type: polypeptideProtein Sequence
Length: 1,788
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.119 | 1.23 | 2.411 | 1.333 | 1.248 | 0.852 | 1.37 | 1.131 | 0.854 | 0.847 | 0.724 | 0.761 | 0.946 | 1.256 | 0.943 | 0.926 | 0.669 | 0.645 | 0.806 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|cell_membrane
|
nucleus
|
KRHR,RKKK,RKRTTELLAKIKRSRE
|
— | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.146
|
0.304
|
0.015
|
0.475
|
0.140
|
0.132
|
0.138
|
0.011
|
0.609
|
0.714
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001045
|
2.000
|
3.000
|
Hsc_gene_22703.t1;Hsc_gene_26480.t1;Hsc_gene_8466.t1
|
Hsc_gene_22703.t1;Hsc_gene_26480.t1;Hsc_gene_26481.t1
|
— |
P07942.2 Laminin subunit beta-1 [Homo sapiens]
|
KAH7731032.1 laminin subunit beta-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.867|GO:0110165_0.867|GO:0008150_0.819|GO:0071944_0.732|GO:0032502_0.699|GO:0009987_0.693|GO:0048856_0.678|GO:0032501_0.659|GO:0007275_0.616|GO:0048731_0.574|GO:0048869_0.552|GO:0030154_0.551|GO:0065007_0.537|GO:0050789_0.532|GO:0003674_0.512|GO:0016043_0.508|GO:0071840_0.508
|
IPR000742+336-380_510-545_777-822_825-869_870-919_922-961_994-1031_1142-1186+|IPR002049+272-329_273-332_273-337_339-392_340-391_340-400_340-402_402-461_403-460_403-462_463-511_463-512_463-513_483-516_514-552_514-553_776-820_776-821_776-823_795-826_823-867_824-867_824-868_824-870_871-911_871-913_871-918_871-920_887-923_920-979_921-978_981-1025_981-1030_981-1032_1032-1081_1033-1081_1033-1083_1054-1086_1083-1137_1084-1133_1084-1138_1140-1188_1141-1181_1141-1187_1141-1191_1160-1191+|IPR008211+29-271_31-272_35-271+|IPR008979+99-180+|IPR013015+553-770_557-763+|IPR050440+771-871+
|
SM00136+29-271+|SM00180+273-337_340-400_403-460_463-511_514-553_776-821_824-868_871-918_921-978_981-1030_1033-1081_1084-1138_1141-1191+|SM00181+336-380_510-545_777-822_825-869_870-919_922-961_994-1031_1142-1186+
|
PF00053+273-332_340-391_403-460_463-511_514-552_776-821_824-867_871-911_921-978_981-1030_1033-1081_1084-1133_1141-1181+Laminin_EGF_domain|PF00055+35-271+Laminin_N-terminal_(Domain_VI)|PF21199+557-763+Laminin_IV_type_B_domain
|
G3DSA:2.10.25.10:FF:000011+823-869+Cadherin_EGF_LAG_seven-pass_G-type_receptor|G3DSA:2.10.25.10:FF:000065+871-918+Laminin_subunit_beta_1|G3DSA:2.10.25.10:FF:000090+462-512+laminin_subunit_alpha|G3DSA:2.10.25.10:FF:000130+981-1032+Laminin_subunit_beta_1|G3DSA:2.10.25.10:FF:000135+1140-1189+Laminin_subunit_beta_4|G3DSA:2.10.25.10:FF:000280+777-822+Laminin_subunit_beta_4|G3DSA:2.10.25.10:FF:000333+306-406+netrin-4_isoform_X2|G3DSA:2.170.300.10:FF:000001+276-394+Laminin_subunit_beta-1|G3DSA:2.170.300.10:FF:000004+395-497+Laminin_subunit_beta_1|G3DSA:2.60.120.260:FF:000010+22-275+Laminin_subunit_beta_1
|
PTHR10574+771-871+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1211-1336;1440-1737;1788-1788
|
3.000
|
1-1210;1337-1439;1738-1787
|
4aqs_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
199219.290
|
5.460
|
-29.500
|
29.251
|
9.060
|
51.174
|
48.826
|
14.485
|
14.765
|
53.691
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
lightyellow
|
1122.185
|
972.713
|
705.784
|
741.423
|
1058.502
|
2202.153
|
1490.643
|
1036.229
|
25.904
|
1812.338
|
1046.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.692
|
-0.529
|
0.179
|
0.482
|
1.072
|
-0.554
|
-1.196
|
0.668
|
-6.266
|
5.012
|
— | — | — |