Hg_chrom1_TN10mRNA_441
Organism: Heterodera glycines Gene Locus: chr1:6761680-6766135 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 0.944 | 0.185 | 0.525 | 0.846 | 1.302 | 0.604 | 2.284 | 0.451 | 1.372 | 0.308 | 0.896 | 0.423 | 0.976 | 1.968 | 1.523 | 1.748 | 1.0 | 2.343 | 0.149 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_418
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
27-80
|
0.985
|
52-90
|
1.000
|
— | — |
0.000
|
— | — |
0.352
|
0.293
|
0.046
|
0.460
|
0.097
|
0.060
|
0.053
|
0.013
|
0.146
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000730
|
4.000
|
2.000
|
Hsc_gene_16206.t1;Hsc_gene_6844.t1
|
— | — | — |
KAI3407796.1 hypothetical protein GPALN_014134 [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
179-197
|
1.000
|
1-178
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
21792.650
|
11.679
|
15.500
|
22.335
|
9.645
|
52.792
|
47.208
|
16.244
|
6.091
|
54.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
348.989
|
980.559
|
825.646
|
482.221
|
294.683
|
303.454
|
255.538
|
595.051
|
137.967
|
21.920
|
71.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.479
|
-1.161
|
-0.666
|
-0.743
|
— |
-0.238
|
0.866
|
-1.077
|
— | — | — | — | — |
No JSON data available for plots.