Hg_chrom1_TN10mRNA_448
Organism: Heterodera glycines Gene Locus: chr1:7045787-7046977 Feature type: polypeptideProtein Sequence
Length: 203
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.573 | 0.627 | 0.679 | 0.657 | 0.758 | 0.528 | 1.97 | 0.657 | 1.598 | 0.746 | 2.028 | 2.189 | 1.042 | 1.709 | 0.704 | 0.565 | 1.642 | 0.379 | 1.159 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_424
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
15-35
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.658
|
0.289
|
0.045
|
0.441
|
0.098
|
0.076
|
0.294
|
0.008
|
0.081
|
0.244
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005659
|
2.000
|
0.000
|
0.000
|
— | — | — |
prf||2208459A cyclin [Euglena gracilis]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.792|GO:0110165_0.757|GO:0008150_0.699|GO:0005622_0.679|GO:0005737_0.616|GO:0009987_0.594|GO:0016020_0.576|GO:0043226_0.502
|
IPR004367+79-161+|IPR006671+33-74+|IPR036915+31-73_75-185+|IPR039361+32-131+
|
— |
PF00134+33-74+Cyclin,_N-terminal_domain|PF02984+79-161+Cyclin,_C-terminal_domain
|
— |
PTHR10177+32-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-203
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
23351.580
|
10.261
|
16.000
|
24.631
|
16.256
|
38.424
|
61.576
|
17.241
|
7.389
|
45.320
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.392
|
0.908
|
2.681
|
1.515
|
2.364
|
3.033
|
3.251
|
8.191
|
2.983
|
0.000
|
1.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.