Hg_chrom1_TN10mRNA_449
Organism: Heterodera glycines Gene Locus: chr1:7054691-7058383 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 1.573 | 0.878 | 1.333 | 1.53 | 1.734 | 0.575 | 0.966 | 2.04 | 1.175 | 1.025 | 1.705 | 1.074 | 0.557 | 1.084 | 0.966 | 0.95 | 0.366 | 0.372 | 0.284 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_425
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.576
|
0.242
|
0.019
|
0.571
|
0.141
|
0.095
|
0.067
|
0.002
|
0.259
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005660
|
1.000
|
1.000
|
Hsc_gene_18933.t1
|
— | — |
P62972.2 Polyubiquitin [Xenopus laevis]
|
7UD5_O Chain O, Polyubiquitin-B [Homo sapiens];8DU4_O Chain O, Polyubiquitin-B [Homo sapiens]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.850|GO:0110165_0.840|GO:0005622_0.782|GO:0043226_0.693|GO:0043229_0.666|GO:0016020_0.665|GO:0005737_0.641|GO:0043227_0.593|GO:0008150_0.586|GO:0043231_0.568
|
IPR000626+131-203_131-207_133-204+|IPR019956+142-162_163-183_184-205+|IPR029071+110-206+|IPR050158+132-205+
|
SM00213+131-203+
|
PF00240+133-204+Ubiquitin_family
|
— |
PTHR10666+132-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-207
|
8du4_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
23497.770
|
5.721
|
-2.000
|
28.019
|
7.246
|
54.106
|
45.894
|
14.010
|
14.010
|
43.961
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
4.588
|
5.913
|
14.080
|
6.859
|
4.114
|
2.496
|
11.458
|
2.482
|
3.060
|
0.000
|
1.312
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.019
|
— |
-0.928
|
— | — |
2.204
|
— |
2.344
|
— | — | — | — | — |
No JSON data available for plots.