Hg_chrom1_TN10mRNA_453
Organism: Heterodera glycines Gene Locus: chr1:7380412-7383556 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 0.698 | 0.707 | 0.67 | 1.148 | 2.401 | 0.568 | 1.943 | 1.57 | 1.051 | 0.857 | 0.52 | 1.031 | 1.597 | 1.046 | 1.54 | 0.898 | 0.428 | 0.136 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_429
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRSTAETDKIKKKVI
|
— | — | — | — | — | — |
0.008
|
— | — |
0.506
|
0.141
|
0.020
|
0.521
|
0.208
|
0.140
|
0.059
|
0.005
|
0.205
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001047
|
4.000
|
1.000
|
Hsc_gene_12320.t1
|
— | — |
P62980.2 Ubiquitin-ribosomal protein eS31 fusion protein [Solanum lycopersicum]
|
XP_022725555.1 ubiquitin-40S ribosomal protein S27a-like [Durio zibethinus]
|
KAH9700404
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.940|GO:0110165_0.940|GO:0005622_0.893|GO:0043226_0.804|GO:0043229_0.794|GO:0016020_0.738|GO:0003674_0.676|GO:0005737_0.664|GO:0043227_0.649|GO:0043231_0.644|GO:0008150_0.571|GO:0043228_0.565|GO:0043232_0.564|GO:0005634_0.527
|
IPR000626+15-86_15-90_17-86+|IPR019956+25-45_46-66_67-88+|IPR029071+12-91+|IPR050158+16-113+
|
SM00213+15-86+
|
PF00240+17-86+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000160+15-90+Polyubiquitin-C
|
PTHR10666+16-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
287-566
|
1.000
|
1-286
|
4v7e_Bf
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
63006.870
|
7.570
|
11.000
|
25.442
|
9.541
|
54.064
|
45.936
|
14.664
|
10.777
|
47.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
173.222
|
0.154
|
1.309
|
1.249
|
1.696
|
4.275
|
1.423
|
1.095
|
5.958
|
749.179
|
430.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-2.065
|
— | — | — | — | — |
-9.196
|
No JSON data available for plots.