Hg_chrom1_TN10mRNA_465
Organism: Heterodera glycines Gene Locus: chr1:7705848-7706740 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 1.479 | 0.631 | 0.199 | 0.289 | 0.593 | 0.757 | 1.156 | 1.028 | 1.875 | 0.088 | 1.02 | 0.482 | 1.0 | 2.241 | 1.652 | 1.232 | 0.963 | 0.889 | 0.68 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_440
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
70-104
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.213
|
0.369
|
0.008
|
0.535
|
0.390
|
0.302
|
0.312
|
0.095
|
0.404
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_574.t1
|
— |
Q9WU45.1 Chloride channel protein 2 [Cavia porcellus]
|
KAI1728506.1 voltage gated chloride channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.888|GO:0009987_0.813|GO:0005575_0.805|GO:0110165_0.793|GO:0016020_0.712|GO:0003674_0.709|GO:0051179_0.667|GO:0051234_0.663|GO:0006810_0.661|GO:0055085_0.637|GO:0006811_0.634|GO:0034220_0.633|GO:0006820_0.629|GO:0006821_0.629|GO:0015698_0.629|GO:0071944_0.602|GO:0005886_0.578|GO:0098660_0.568|GO:0098656_0.564|GO:0098661_0.564|GO:1902476_0.564|GO:0065007_0.557|GO:0005215_0.548|GO:0005216_0.548|GO:0005253_0.548|GO:0005254_0.548|GO:0008509_0.548|GO:0015075_0.548|GO:0015103_0.548|GO:0015108_0.548|GO:0015267_0.548|GO:0015318_0.548|GO:0022803_0.548|GO:0022857_0.548|GO:0032501_0.507
|
IPR046342+9-92_20-87+|IPR050970+17-99+
|
— | — | — |
PTHR45720+17-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
120-173
|
1.000
|
1-119
|
8ta6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
18877.610
|
11.943
|
13.000
|
19.075
|
7.514
|
46.821
|
53.179
|
13.873
|
5.202
|
56.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
cyan
|
10.679
|
1.445
|
20.305
|
12.029
|
11.475
|
8.537
|
13.864
|
42.305
|
0.691
|
4.969
|
3.135
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.578
|
2.914
|
— | — | — | — |
2.203
|
-1.467
|
— |
3.961
|
— | — | — |
No JSON data available for plots.