Hg_chrom1_TN10mRNA_466
Organism: Heterodera glycines Gene Locus: chr1:7729156-7732351 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 0.936 | 0.844 | 0.641 | 0.671 | 1.588 | 0.811 | 1.084 | 1.032 | 1.757 | 1.126 | 0.546 | 1.634 | 0.714 | 1.39 | 0.84 | 1.066 | 0.985 | 0.953 | 0.728 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_441
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RVPKRVR,KRQLKKCSGEPVLRRSER,KKCSGEPVLRRSERVPKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.485
|
0.179
|
0.092
|
0.372
|
0.112
|
0.069
|
0.054
|
0.071
|
0.074
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002930
|
1.000
|
2.000
|
Hsc_gene_20670.t1;Hsc_gene_25124.t1
|
Hsc_gene_3535.t1
|
— |
Q09575.1 Uncharacterized protein K02A2.6 [Caenorhabditis elegans]
|
KAK5981553.1 Retroviral aspartyl protease [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR041373+177-208+|IPR041588+245-282+|IPR043502+178-227+|IPR050951+177-245+
|
— |
PF17917+177-208+RNase_H-like_domain_found_in_reverse_transcriptase|PF17921+245-282+Integrase_zinc_binding_domain
|
— |
PTHR37984+177-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
323-323
|
1.000
|
1-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
36738.570
|
10.319
|
21.500
|
25.077
|
11.765
|
47.678
|
52.322
|
16.409
|
8.669
|
45.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
47.224
|
3.328
|
27.444
|
6.132
|
5.269
|
18.778
|
10.128
|
118.113
|
19.280
|
121.195
|
77.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.806
|
— |
-2.054
|
— |
1.847
|
-0.886
|
2.557
|
-3.408
|
— | — |
-4.283
|
— | — |
No JSON data available for plots.