Hg_chrom1_TN10mRNA_469
Organism: Heterodera glycines Gene Locus: chr1:7803919-7804774 Feature type: polypeptideProtein Sequence
Length: 92
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 0.506 | 1.383 | 0.75 | 0.362 | 1.115 | 0.776 | 1.63 | 1.691 | 1.469 | 0.165 | 2.558 | 3.623 | 0.418 | 1.775 | 0.621 | 1.069 | 0.494 | 0.0 | 1.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_444
|
— | — |
0.667
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
— | — | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
7-38
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.251
|
0.199
|
0.079
|
0.584
|
0.272
|
0.374
|
0.231
|
0.037
|
0.183
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001048
|
3.000
|
2.000
|
Hsc_gene_8765.t1;Hsc_gene_8765.t2
|
— | — | — |
KJH53241.1 EF hand [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.921|GO:0005575_0.892|GO:0110165_0.882|GO:0009987_0.852|GO:0003674_0.807|GO:0050896_0.780|GO:0005622_0.758|GO:0005737_0.758|GO:0005488_0.748|GO:0005515_0.723|GO:0042221_0.713|GO:0010038_0.677|GO:0051592_0.670|GO:0036094_0.668|GO:0043167_0.667|GO:0043169_0.667|GO:0042802_0.663|GO:0046872_0.661|GO:0046983_0.655|GO:0005509_0.650|GO:0048306_0.650|GO:0016020_0.582|GO:0065007_0.555|GO:0050789_0.542|GO:0043226_0.519|GO:0008219_0.511|GO:0012501_0.511|GO:0006915_0.508|GO:0043229_0.507
|
IPR011992+8-87+|IPR051426+8-89+
|
— | — | — |
PTHR46212+8-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-92
|
2zrt_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
10921.650
|
7.240
|
1.500
|
22.826
|
21.739
|
40.217
|
59.783
|
13.043
|
9.783
|
39.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
611.949
|
0.313
|
0.802
|
0.253
|
0.178
|
0.245
|
0.000
|
0.279
|
1.028
|
2675.730
|
1529.429
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-11.165
|
— |
-13.413
|
— | — |
No JSON data available for plots.