Hg_chrom1_TN10mRNA_471
Organism: Heterodera glycines Gene Locus: chr1:7839645-7842218 Feature type: polypeptideProtein Sequence
Length: 231
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 1.007 | 1.023 | 0.597 | 0.361 | 0.333 | 0.567 | 1.082 | 1.443 | 2.048 | 0.525 | 2.037 | 1.684 | 0.583 | 0.972 | 1.175 | 0.852 | 1.115 | 0.999 | 1.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_446
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.170
|
0.039
|
0.223
|
0.457
|
0.312
|
0.529
|
0.081
|
0.297
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000362
|
7.000
|
1.000
|
Hsc_gene_1937.t1
|
— | — |
Q0V882.1 Bax inhibitor 1 [Bos taurus]
|
KAI3410030.1 Bax inhibitor 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.785|GO:0110165_0.785|GO:0016020_0.753|GO:0009987_0.752|GO:0071944_0.731|GO:0005886_0.709|GO:0005622_0.658|GO:0005737_0.658|GO:0065007_0.646|GO:0050896_0.642|GO:0050789_0.625|GO:0043226_0.614|GO:0051716_0.613|GO:0008152_0.610|GO:0005773_0.605|GO:0043227_0.605|GO:0043229_0.605|GO:0043231_0.605|GO:0050794_0.604|GO:0044238_0.592|GO:0044237_0.588|GO:0009058_0.586|GO:0007154_0.585|GO:0023052_0.585|GO:0007165_0.573|GO:0044249_0.573|GO:0012505_0.572|GO:0006950_0.570|GO:0048519_0.557|GO:0048523_0.551|GO:0033554_0.544|GO:0008219_0.537|GO:0012501_0.536|GO:0043067_0.535|GO:0043069_0.534|GO:0005783_0.508
|
IPR006214+104-219_108-219+
|
— |
PF01027+104-219+Inhibitor_of_apoptosis-promoting_Bax1
|
— |
PTHR23291+108-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
26022.510
|
7.735
|
3.500
|
18.182
|
14.719
|
37.229
|
62.771
|
10.390
|
7.792
|
48.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
207.028
|
1.691
|
2.982
|
2.367
|
4.768
|
5.336
|
3.866
|
13.257
|
17.643
|
879.665
|
510.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-1.629
|
-5.769
|
— |
-7.027
|
— | — |
No JSON data available for plots.