Hg_chrom1_TN10mRNA_474
Organism: Heterodera glycines Gene Locus: chr1:7907576-7910102 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.069 | 0.418 | 2.18 | 0.67 | 0.884 | 0.411 | 2.874 | 1.533 | 1.165 | 0.958 | 2.028 | 1.756 | 0.663 | 1.642 | 0.903 | 1.225 | 0.435 | 0.884 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_449
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRKNERTNKKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.339
|
0.023
|
0.303
|
0.064
|
0.027
|
0.021
|
0.005
|
0.128
|
0.487
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002932
|
2.000
|
1.000
|
Hsc_gene_13679.t1
|
— | — | — |
KAF7639172.1 F-box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.883|GO:0110165_0.876|GO:0005622_0.808|GO:0016020_0.800|GO:0043226_0.771|GO:0043229_0.762|GO:0043227_0.749|GO:0043231_0.737|GO:0005634_0.619|GO:0008150_0.582
|
IPR040394+38-132+
|
— | — | — |
PTHR13123+38-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-174
|
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
20014.460
|
9.982
|
19.000
|
26.437
|
14.368
|
48.276
|
51.724
|
20.115
|
6.322
|
44.828
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
89.270
|
61.626
|
79.113
|
66.544
|
50.209
|
91.839
|
27.596
|
129.497
|
67.875
|
149.739
|
114.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.883
|
-1.725
|
— |
-2.089
|
— | — | — | — | — |
No JSON data available for plots.