Hg_chrom1_TN10mRNA_475
Organism: Heterodera glycines Gene Locus: chr1:7914056-7917006 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.797 | 0.831 | 0.887 | 0.524 | 0.586 | 0.578 | 0.714 | 1.46 | 1.66 | 0.303 | 0.672 | 2.222 | 0.549 | 1.458 | 1.102 | 1.311 | 1.255 | 0.44 | 1.008 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_450
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — |
38-59
|
1.000
|
— | — | — | — |
0.002
|
— | — |
0.252
|
0.325
|
0.094
|
0.389
|
0.481
|
0.148
|
0.538
|
0.086
|
0.062
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001662
|
2.000
|
2.000
|
Hsc_gene_13864.t1;Hsc_gene_13866.t1
|
— | — |
O14617.1 AP-3 complex subunit delta-1 [Homo sapiens]
|
KAF7639491.1 AP-3 complex subunit delta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.902|GO:0110165_0.899|GO:0016020_0.852|GO:0008150_0.767|GO:0005622_0.746|GO:0071944_0.744|GO:0005886_0.737|GO:0009987_0.717|GO:0005737_0.714|GO:0043226_0.647|GO:0043229_0.632|GO:0051179_0.629|GO:0043227_0.627|GO:0051234_0.625|GO:0006810_0.614|GO:0043231_0.606|GO:0005773_0.549|GO:0012505_0.531
|
IPR002553+135-219+|IPR011989+131-228+|IPR016024+135-204+|IPR017105+135-220+
|
— |
PF01602+135-219+Adaptin_N_terminal_region
|
— |
PTHR22781+135-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
9c5b_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
38949.260
|
8.388
|
7.500
|
18.286
|
13.429
|
39.714
|
60.286
|
10.571
|
7.714
|
52.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
92.581
|
8.132
|
9.095
|
9.202
|
7.088
|
17.022
|
5.168
|
25.890
|
4.112
|
371.360
|
213.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.272
|
-1.714
|
— |
-2.190
|
-6.548
|
— |
-5.067
|
— | — |
No JSON data available for plots.