Hg_chrom1_TN10mRNA_482
Organism: Heterodera glycines Gene Locus: chr1:7959379-7960986 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 1.085 | 1.166 | 1.106 | 0.68 | 0.822 | 0.278 | 0.875 | 1.296 | 1.221 | 0.839 | 1.372 | 1.782 | 1.177 | 0.833 | 1.749 | 0.86 | 1.06 | 1.794 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_455
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
23-43
|
0.999
|
12-97
|
0.993
|
— | — |
0.002
|
— | — |
0.320
|
0.459
|
0.033
|
0.475
|
0.142
|
0.083
|
0.148
|
0.031
|
0.201
|
0.453
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000283
|
1.000
|
8.000
|
Hsc_gene_13231.t1;Hsc_gene_16275.t1;Hsc_gene_19091.t1;Hsc_gene_4069.t1;Hsc_gene_4069.t2;Hsc_gene_4071.t1;Hsc_gene_7744.t1;Hsc_gene_8777.t1
|
— | — | — |
KAI3416540.1 hypothetical protein GPALN_006081 [Globodera pallida]
|
KIM44799
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
320-343
|
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
38338.970
|
6.478
|
0.000
|
21.866
|
11.370
|
47.230
|
52.770
|
11.370
|
10.496
|
54.519
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
19.637
|
1.682
|
7.349
|
5.934
|
5.284
|
11.144
|
6.485
|
8.550
|
0.000
|
68.502
|
39.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.905
|
1.682
|
— | — |
1.083
|
— | — | — |
-6.847
|
— | — | — | — |
No JSON data available for plots.