Hg_chrom1_TN10mRNA_486
Organism: Heterodera glycines Gene Locus: chr1:7971717-7973025 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.054 | 1.09 | 1.023 | 0.754 | 0.938 | 0.881 | 1.86 | 0.938 | 1.25 | 0.802 | 0.805 | 1.471 | 1.736 | 0.481 | 0.957 | 1.027 | 0.871 | 0.663 | 0.481 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_459
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
TSGGRGGAGQKLGGERNAGAGRGGGKGNGRGGGSGGRGGR
|
— | — | — | — | — | — |
0.002
|
— | — |
0.204
|
0.084
|
0.021
|
0.162
|
0.586
|
0.259
|
0.249
|
0.010
|
0.166
|
0.497
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001663
|
2.000
|
2.000
|
Hsc_gene_22732.t1;Hsc_gene_2870.t1
|
— | — |
O61998.2 Heat shock protein 90 [Brugia pahangi]
|
ACR57216.1 Hsp90 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.815|GO:0110165_0.808|GO:0008150_0.731|GO:0005622_0.653|GO:0003674_0.652|GO:0009987_0.651|GO:0005737_0.634|GO:0016020_0.584|GO:0005488_0.544|GO:0043226_0.528|GO:0050896_0.525
|
IPR001404+94-218+|IPR036890+77-222_80-222+
|
— | — | — |
PTHR11528+94-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
241-320
|
1.000
|
1-240
|
4gqt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
33769.810
|
6.239
|
-1.000
|
23.125
|
10.312
|
43.750
|
56.250
|
11.875
|
11.250
|
56.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
510.547
|
4.591
|
1.609
|
4.493
|
7.751
|
4.526
|
36.449
|
28.794
|
2.764
|
2198.489
|
1257.464
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.737
|
— |
1.587
|
— | — |
3.025
|
2.577
|
— |
-7.314
|
— |
-7.514
|
— | — |
No JSON data available for plots.