Hg_chrom1_TN10mRNA_492
Organism: Heterodera glycines Gene Locus: chr1:8116312-8119368 Feature type: polypeptideProtein Sequence
Length: 419
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.999 | 2.387 | 0.608 | 0.247 | 1.631 | 1.224 | 0.994 | 0.716 | 1.538 | 1.032 | 0.796 | 1.965 | 0.928 | 0.459 | 0.925 | 0.818 | 0.861 | 0.723 | 0.551 | 0.842 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_465
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.843
|
1.000
|
0.000
|
0.000
|
0.461
|
0.064
|
0.007
|
0.633
|
0.420
|
0.151
|
0.057
|
0.044
|
0.097
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — | — |
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.940|GO:0009987_0.714|GO:0065007_0.623|GO:0050789_0.614|GO:0005575_0.611|GO:0008152_0.611|GO:0110165_0.610|GO:0044238_0.597|GO:0050794_0.592|GO:0005622_0.554|GO:0019222_0.549|GO:0048519_0.549|GO:0080090_0.543|GO:0048523_0.535|GO:0016020_0.520|GO:0043226_0.503
|
IPR001870+216-412+|IPR003877+285-411_295-409+|IPR013320+226-412+|IPR043136+216-419+|IPR044736+297-408+|IPR050618+188-410+
|
SM00449+285-411+
|
PF00622+295-409+SPRY_domain
|
— |
PTHR12864+188-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-213
|
2.000
|
1-81;214-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
46452.030
|
4.820
|
-11.000
|
24.344
|
8.353
|
50.358
|
49.642
|
11.217
|
13.126
|
49.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
879.808
|
9.021
|
37.254
|
980.902
|
2696.921
|
1813.891
|
245.015
|
274.914
|
18.659
|
1563.446
|
901.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.820
|
6.627
|
4.827
|
1.427
|
-0.557
|
-2.879
|
-2.836
|
— |
-6.511
|
5.907
|
— | — | — |