Hg_chrom1_TN10mRNA_493
Organism: Heterodera glycines Gene Locus: chr1:8116312-8119368 Feature type: polypeptideProtein Sequence
Length: 374
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 2.425 | 0.632 | 0.277 | 1.515 | 1.234 | 0.955 | 0.802 | 1.485 | 0.976 | 0.81 | 1.416 | 0.966 | 0.514 | 0.873 | 0.84 | 0.789 | 0.851 | 0.617 | 0.944 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_465
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.843
|
1.000
|
0.000
|
0.000
|
0.420
|
0.070
|
0.008
|
0.638
|
0.380
|
0.183
|
0.068
|
0.053
|
0.135
|
0.359
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — | — |
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.937|GO:0009987_0.709|GO:0065007_0.618|GO:0008152_0.615|GO:0050789_0.610|GO:0005575_0.606|GO:0110165_0.606|GO:0044238_0.599|GO:0050794_0.588|GO:0019222_0.548|GO:0048519_0.546|GO:0005622_0.544|GO:0080090_0.542|GO:0048523_0.535|GO:0016020_0.516
|
IPR001870+171-367+|IPR003877+240-366_250-364+|IPR013320+181-367+|IPR043136+187-374+|IPR044736+252-363+|IPR050618+126-365+
|
SM00449+240-366+
|
PF00622+250-364+SPRY_domain
|
— |
PTHR12864+126-365+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
64-168
|
2.000
|
1-63;169-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
41338.190
|
4.963
|
-8.000
|
23.797
|
9.091
|
49.733
|
50.267
|
11.230
|
12.567
|
51.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
879.808
|
9.021
|
37.254
|
980.902
|
2696.921
|
1813.891
|
245.015
|
274.914
|
18.659
|
1563.446
|
901.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.820
|
6.627
|
4.827
|
1.427
|
-0.557
|
-2.879
|
-2.836
|
— |
-6.511
|
5.907
|
— | — | — |