Hg_chrom1_TN10mRNA_5
Organism: Heterodera glycines Gene Locus: chr1:116590-121100 Feature type: polypeptideProtein Sequence
Length: 539
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 1.251 | 1.012 | 0.576 | 1.082 | 1.332 | 0.839 | 1.02 | 0.742 | 1.053 | 0.562 | 1.637 | 0.67 | 1.499 | 1.704 | 1.431 | 0.943 | 0.759 | 0.714 | 0.218 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_5
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRICTVLRLTVDEQKRKLN
|
— | — |
4-24
|
0.987
|
— | — |
0.000
|
— | — |
0.372
|
0.163
|
0.055
|
0.591
|
0.096
|
0.116
|
0.079
|
0.015
|
0.153
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005550
|
1.000
|
1.000
|
Hsc_gene_13400.t1
|
Hsc_gene_26017.t1;Hsc_gene_26017.t2
|
— | — |
CAK5123937.1 unnamed protein product [Meloidogyne enterolobii]
|
MBP7740835
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-255;343-539
|
1.000
|
256-342
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
58985.950
|
7.430
|
5.500
|
26.160
|
6.122
|
52.505
|
47.495
|
14.100
|
12.059
|
56.215
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
48.725
|
6.846
|
52.946
|
30.077
|
32.540
|
33.439
|
12.580
|
49.804
|
34.310
|
105.603
|
75.049
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.719
|
1.995
|
-0.708
|
— | — |
-1.401
|
— |
-1.842
|
— | — | — | — | — |
No JSON data available for plots.