Hg_chrom1_TN10mRNA_50
Organism: Heterodera glycines Gene Locus: chr1:396966-404758 Feature type: polypeptideProtein Sequence
Length: 1,164
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 1.419 | 1.031 | 1.452 | 1.16 | 0.881 | 0.798 | 1.117 | 1.489 | 1.01 | 1.302 | 1.162 | 1.313 | 1.041 | 0.877 | 0.847 | 0.803 | 0.677 | 1.057 | 0.834 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_49
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RKKR,RKLLLCYQSEMAKNKKISK
|
— | — | — | — |
1-19
|
0.994
|
0.999
|
0.000
|
0.000
|
0.312
|
0.233
|
0.071
|
0.288
|
0.210
|
0.106
|
0.114
|
0.060
|
0.357
|
0.543
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000233
|
6.000
|
4.000
|
Hsc_gene_22581.t1;Hsc_gene_22632.t1;Hsc_gene_24320.t1;Hsc_gene_24321.t1
|
Hsc_gene_22549.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.797|GO:0005575_0.596|GO:0110165_0.596|GO:0032501_0.563|GO:0003674_0.508
|
IPR000742+835-846+|IPR001506+584-815_708-726_714-810_727-744_758-773_797-810+|IPR006026+589-763+|IPR024079+538-813+
|
SM00235+589-763+
|
PF01400+714-810+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+548-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
131162.930
|
7.521
|
16.000
|
27.749
|
11.168
|
48.110
|
51.890
|
15.120
|
12.629
|
49.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
118.571
|
15.193
|
29.561
|
55.087
|
104.527
|
255.012
|
68.464
|
749.331
|
11.731
|
31.011
|
22.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
1.720
|
1.008
|
0.894
|
1.300
|
-1.887
|
1.452
|
-3.311
|
— | — | — | — | — |