Hg_chrom1_TN10mRNA_502
Organism: Heterodera glycines Gene Locus: chr1:8185051-8185969 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.381 | 1.144 | 0.695 | 1.507 | 0.273 | 1.121 | 0.585 | 1.639 | 2.186 | 1.551 | 0.911 | 0.964 | 3.188 | 1.156 | 1.115 | 0.781 | 0.627 | 0.662 | 2.522 | 0.161 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_474
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRRR,RRFNCIVDEHFKTRKWKL
|
20-42
|
0.921
|
— | — | — | — |
0.000
|
— | — |
0.406
|
0.403
|
0.041
|
0.284
|
0.625
|
0.197
|
0.249
|
0.033
|
0.127
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000061
|
1.000
|
19.000
|
Hsc_gene_11018.t1;Hsc_gene_11021.t1;Hsc_gene_11224.t1;Hsc_gene_11228.t1;Hsc_gene_11817.t1;Hsc_gene_13779.t1;Hsc_gene_14781.t1;Hsc_gene_20400.t1;Hsc_gene_21159.t1;Hsc_gene_21159.t2;Hsc_gene_21984.t1;Hsc_gene_22792.t1;Hsc_gene_2280.t3;Hsc_gene_23786.t1;Hsc_gene_25455.t1;Hsc_gene_26279.t1;Hsc_gene_4072.t1;Hsc_gene_6153.t1;Hsc_gene_8787.t1
|
Hsc_gene_25483.t1
|
— | — |
KAI3411078.1 hypothetical protein GPALN_003163 [Globodera pallida]
|
MBK8261859
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
21440.470
|
10.063
|
14.000
|
20.219
|
18.579
|
38.798
|
61.202
|
14.754
|
5.464
|
40.984
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
white
|
4.352
|
0.000
|
0.768
|
3.980
|
13.578
|
11.984
|
7.809
|
12.655
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.424
|
2.448
|
1.742
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.