Hg_chrom1_TN10mRNA_503
Organism: Heterodera glycines Gene Locus: chr1:8196096-8209390 Feature type: polypeptideProtein Sequence
Length: 1,174
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.406 | 1.084 | 1.41 | 0.994 | 1.048 | 0.69 | 1.278 | 1.344 | 0.967 | 1.291 | 1.253 | 1.183 | 0.917 | 0.973 | 0.973 | 1.061 | 0.529 | 1.048 | 0.651 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_475
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKVK,RKDKRAR,STKKRRKR,KKFIVCHVIQKRTRA
|
— | — | — | — |
1-19
|
0.972
|
0.997
|
0.000
|
0.000
|
0.208
|
0.270
|
0.036
|
0.157
|
0.116
|
0.066
|
0.165
|
0.030
|
0.199
|
0.895
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000236
|
2.000
|
8.000
|
Hsc_gene_1405.t1;Hsc_gene_1405.t2;Hsc_gene_16432.t1;Hsc_gene_21494.t1;Hsc_gene_21494.t2;Hsc_gene_26266.t1;Hsc_gene_9074.t1;Hsc_gene_9074.t2
|
Hsc_gene_16432.t1;Hsc_gene_26265.t1;Hsc_gene_26265.t2;Hsc_gene_26265.t3;Hsc_gene_26266.t1
|
— |
D5FM38.1 Zinc metalloproteinase nas-36 [Brugia malayi]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.962|GO:0032501_0.699|GO:0032502_0.607|GO:0048856_0.601|GO:0005575_0.528|GO:0110165_0.526|GO:0007275_0.502
|
IPR000742+858-869+|IPR001506+640-834_669-834_675-693_729-747_782-797_820-833+|IPR006026+645-787+|IPR024079+602-836+
|
SM00235+645-787+
|
PF01400+669-834+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+604-941+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1067-1111
|
2.000
|
1-1066;1112-1174
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
131680.770
|
8.169
|
31.000
|
27.768
|
10.392
|
51.193
|
48.807
|
15.843
|
11.925
|
50.937
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
531.090
|
4.270
|
11.153
|
16.478
|
13.911
|
160.966
|
38.694
|
274.682
|
14.054
|
2117.922
|
1216.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.155
|
1.809
|
0.672
|
— |
3.545
|
-2.049
|
— |
-2.684
|
-7.345
|
— |
-6.845
|
— | — |