Hg_chrom1_TN10mRNA_510
Organism: Heterodera glycines Gene Locus: chr1:8247432-8249811 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 2.221 | 0.919 | 0.581 | 1.404 | 1.296 | 0.334 | 1.124 | 1.498 | 1.139 | 1.192 | 1.652 | 2.029 | 0.432 | 0.573 | 1.445 | 0.921 | 0.596 | 0.864 | 0.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_482
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKMCRKNIVKKGKKKQK.,IRKMCRKNIVKKGKKKQK,KKLIRKMCRKNIVKKGKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.950
|
0.153
|
0.016
|
0.136
|
0.027
|
0.019
|
0.026
|
0.009
|
0.032
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001049
|
4.000
|
1.000
|
Hsc_gene_25140.t1
|
— | — |
Q339W7.1 Probable chromo domain-containing protein LHP1 [Oryza sativa Japonica Group]
|
XP_024881395.1 histone-lysine N-methyltransferase Su(var)3-9-like isoform X1 [Temnothorax curvispinosus]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0005575_0.803|GO:0110165_0.794|GO:0005622_0.787|GO:0043226_0.749|GO:0043229_0.738|GO:0009987_0.732|GO:0003674_0.726|GO:0016020_0.723|GO:0043227_0.709|GO:0043231_0.701|GO:0005488_0.644|GO:0005634_0.599|GO:0065007_0.549|GO:0050789_0.535|GO:0050794_0.528|GO:0005515_0.513|GO:0008152_0.503
|
IPR000953+104-157_105-153+|IPR016197+98-153+|IPR023780+105-152+|IPR051219+96-152+
|
SM00298+104-157+
|
PF00385+105-152+Chromo_(CHRromatin_Organisation_MOdifier)_domain
|
— |
PTHR22812+96-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-178
|
1.000
|
1-176
|
9h77_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
20333.910
|
5.303
|
-3.000
|
26.404
|
11.236
|
56.742
|
43.258
|
12.921
|
13.483
|
46.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
6.156
|
5.048
|
3.079
|
5.467
|
3.883
|
4.298
|
1.629
|
5.826
|
1.028
|
15.202
|
9.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.