Hg_chrom1_TN10mRNA_513
Organism: Heterodera glycines Gene Locus: chr1:8267642-8271765 Feature type: polypeptideProtein Sequence
Length: 620
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.113 | 1.275 | 0.235 | 0.0 | 4.624 | 2.151 | 0.787 | 0.0 | 0.251 | 0.0 | 3.152 | 0.095 | 0.0 | 0.0 | 3.357 | 0.092 | 0.555 | 0.904 | 0.744 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRNRKRDRRGTERRRGT,RKRKRNKKRNRKRNRRG,RKWKRNRKRDRRGTERRRG,KRNRKRKRNKKRNRKRNRR,KRNRKRNRKGKRNRKIKWK,RKRNRKGKRNRKIKWKRNR,KRNRKGKRNRKIKWKRNRK,RKGKRNRKIKWKRNRKWKR,KRNRKIKWKRNRKWKRKWK,RKIKWKRNRKWKRKWKRNR,KRNRKWKRKWKRNRKWKRN,RKWKRKWKRNRKWKRNRKW,KRKWKRNRKWKRNRKWKRN,RKWKRNRKWKRNRKWKRNR,KRNRKWKRNRKWKRNRKRD,RKWKRNRKWKRNRKRDRRG,KRNRKRDRRGTERGRGTKR,GQKRNRKRNRKGKRKRNKKRNRKRNRRGTERGTERGRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.410
|
0.012
|
0.034
|
0.503
|
0.059
|
0.017
|
0.017
|
0.000
|
0.159
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-620
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
77100.110
|
10.584
|
51.000
|
66.290
|
0.968
|
84.194
|
15.806
|
37.258
|
29.032
|
24.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.637
|
0.749
|
2.492
|
0.492
|
0.489
|
1.009
|
0.000
|
0.547
|
10.988
|
1.129
|
5.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-2.223
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.