Hg_chrom1_TN10mRNA_516
Organism: Heterodera glycines Gene Locus: chr1:8274646-8276303 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.754 | 0.835 | 0.746 | 1.261 | 1.04 | 0.644 | 0.811 | 0.36 | 1.607 | 0.532 | 1.272 | 1.802 | 0.936 | 1.6 | 1.313 | 1.108 | 0.778 | 0.624 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_487
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.137
|
0.469
|
0.043
|
0.427
|
0.191
|
0.156
|
0.236
|
0.108
|
0.167
|
0.517
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000501
|
2.000
|
5.000
|
Hsc_gene_2659.t1;Hsc_gene_2659.t2;Hsc_gene_2659.t3;Hsc_gene_2659.t4;Hsc_gene_2659.t5
|
— | — | — |
KAI1707955.1 alpha-2-macroglobulin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
41619.160
|
6.496
|
0.000
|
25.135
|
11.622
|
48.378
|
51.622
|
12.973
|
12.162
|
49.730
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
231.567
|
536.547
|
494.075
|
290.857
|
247.830
|
323.031
|
267.786
|
400.278
|
12.404
|
43.653
|
30.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.348
|
-1.021
|
-0.656
|
-0.264
|
0.398
|
-0.261
|
— |
-0.439
|
— |
4.758
|
— | — | — |
No JSON data available for plots.