Hg_chrom1_TN10mRNA_520
Organism: Heterodera glycines Gene Locus: chr1:8305718-8307758 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.543 | 0.637 | 1.128 | 0.467 | 1.018 | 1.029 | 1.869 | 1.246 | 1.452 | 1.027 | 0.55 | 1.623 | 0.988 | 1.478 | 0.935 | 0.498 | 1.239 | 0.719 | 0.893 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_491
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.205
|
0.537
|
0.062
|
0.274
|
0.249
|
0.098
|
0.173
|
0.041
|
0.267
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002938
|
2.000
|
1.000
|
Hsc_gene_8694.t1
|
Hsc_gene_8693.t1;Hsc_gene_8694.t1
|
— |
Q000K2.1 ADP/ATP translocase 2 [Tachyglossus aculeatus aculeatus]
|
KAF8357302.1 ant-1.1 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005471|GO:0005743|GO:0055085|GO:0140021|GO:1990544
|
GO:0005575_0.868|GO:0110165_0.868|GO:0008150_0.798|GO:0016020_0.776|GO:0009987_0.727|GO:0005622_0.713|GO:0003674_0.693|GO:0043226_0.676|GO:0005737_0.665|GO:0043229_0.662|GO:0043227_0.642|GO:0043231_0.636|GO:0006810_0.594|GO:0051179_0.594|GO:0051234_0.594
|
IPR002067+26-39_39-53_88-108_141-159+|IPR002113+19-192_23-35_66-87_99-111_126-139+|IPR018108+21-113_21-116_126-217_128-192+|IPR023395+19-193_21-192+
|
— |
PF00153+21-116_128-192+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000201+18-123+Solute_carrier_family_25_member_4
|
PTHR45635+19-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-428
|
2c3e_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
47616.820
|
10.447
|
41.000
|
24.065
|
13.551
|
39.953
|
60.047
|
17.757
|
6.308
|
48.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1485.190
|
619.191
|
1922.472
|
882.950
|
768.466
|
704.793
|
1264.387
|
3170.252
|
1137.730
|
2144.718
|
1713.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.405
|
0.374
|
-1.014
|
-0.233
|
— |
0.856
|
2.068
|
-1.183
|
— | — | — | — | — |
No JSON data available for plots.