Hg_chrom1_TN10mRNA_521
Organism: Heterodera glycines Gene Locus: chr1:8342085-8343304 Feature type: polypeptideProtein Sequence
Length: 243
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.627 | 0.67 | 1.347 | 0.142 | 0.892 | 0.844 | 0.735 | 0.823 | 0.457 | 0.556 | 2.307 | 2.905 | 0.229 | 1.345 | 0.336 | 0.941 | 0.877 | 1.122 | 0.0 | 1.089 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_492
|
— | — |
1.444
|
2.000
|
3.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_23186;Hsc_gene_8453
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKVTIAKTAQVKDKKS,KKDNKKAAVAASPAKGKASPKGGKSPAKGKAAKKLKPKKDAKGIKAKKAKPAKKGKAAKVVKGTPKTVKKVTIAK
|
— | — | — | — |
1-23
|
0.985
|
1.000
|
0.000
|
0.000
|
0.584
|
0.043
|
0.022
|
0.541
|
0.080
|
0.089
|
0.221
|
0.004
|
0.206
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001050
|
4.000
|
1.000
|
Hsc_gene_8453.t1
|
Hsc_gene_8453.t1
|
— | — |
QLK97571.1 secretory protein 10A07 [Heterodera glycines]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-243
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
26060.860
|
9.930
|
12.000
|
31.276
|
6.173
|
49.383
|
50.617
|
18.519
|
12.757
|
57.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
376.647
|
2.905
|
1.022
|
527.465
|
440.776
|
38.675
|
45.413
|
48.631
|
4.146
|
1230.391
|
704.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.741
|
7.366
|
9.121
|
-0.290
|
-3.497
|
— | — | — |
-8.376
|
7.223
|
— | — |
5.000
|