Hg_chrom1_TN10mRNA_524
Organism: Heterodera glycines Gene Locus: chr1:8358003-8360238 Feature type: polypeptideProtein Sequence
Length: 418
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.141 | 0.89 | 1.044 | 0.99 | 0.877 | 0.797 | 0.57 | 1.196 | 1.329 | 1.035 | 0.725 | 1.407 | 1.661 | 1.38 | 1.074 | 0.923 | 1.177 | 1.051 | 1.104 | 0.281 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_495
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
43-81
|
0.936
|
— | — |
0.033
|
— | — |
0.475
|
0.330
|
0.082
|
0.445
|
0.154
|
0.037
|
0.091
|
0.025
|
0.299
|
0.409
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001051
|
3.000
|
2.000
|
Hsc_gene_8992.t1;Hsc_gene_9003.t1
|
— | — | — |
KAI3411119.1 hypothetical protein GPALN_003202 [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
45-98;404-418
|
2.000
|
1-44;99-403
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
46160.020
|
6.643
|
1.000
|
23.445
|
10.766
|
44.019
|
55.981
|
12.440
|
11.005
|
54.785
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
14.583
|
9.042
|
3.515
|
8.298
|
10.277
|
7.830
|
4.769
|
6.620
|
0.000
|
44.918
|
25.668
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.599
|
— |
1.352
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.