Hg_chrom1_TN10mRNA_525
Organism: Heterodera glycines Gene Locus: chr1:8362541-8368838 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.604 | 1.004 | 1.008 | 0.866 | 0.916 | 0.464 | 1.623 | 1.732 | 1.404 | 0.738 | 1.146 | 2.074 | 0.874 | 2.054 | 1.113 | 0.373 | 0.738 | 0.749 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_496
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
70-99
|
0.984
|
31-58
|
0.994
|
— | — |
0.000
|
— | — |
0.466
|
0.180
|
0.082
|
0.500
|
0.186
|
0.124
|
0.139
|
0.416
|
0.147
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000237
|
5.000
|
5.000
|
Hsc_gene_10887.t1;Hsc_gene_2156.t1;Hsc_gene_25051.t1;Hsc_gene_3476.t1;Hsc_gene_3485.t1
|
Hsc_gene_13617.t1;Hsc_gene_9697.t1
|
— |
P98081.2 Protein disabled [Drosophila melanogaster]
|
KAI1727446.1 phosphotyrosine interaction domain (PTB/PID) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0005575_0.887|GO:0110165_0.887|GO:0009987_0.878|GO:0003674_0.851|GO:0065007_0.823|GO:0005622_0.815|GO:0050789_0.812|GO:0016020_0.807|GO:0050794_0.787|GO:0050896_0.784|GO:0005488_0.770|GO:0032501_0.769|GO:0051716_0.759|GO:0032502_0.741|GO:0048856_0.741|GO:0005737_0.740|GO:0005515_0.735|GO:0051179_0.732|GO:0071840_0.732|GO:0007154_0.730|GO:0023052_0.726|GO:0007275_0.724|GO:0016043_0.724|GO:0048518_0.724|GO:0051234_0.724|GO:0006810_0.722|GO:0048731_0.717|GO:0071944_0.717|GO:0007165_0.716|GO:0048522_0.715|GO:0005886_0.714|GO:0030154_0.709|GO:0048869_0.709|GO:0048468_0.705|GO:0010646_0.702|GO:0023051_0.702|GO:0048583_0.699|GO:0051641_0.699|GO:0006996_0.695|GO:0048513_0.694|GO:0007399_0.693|GO:0009966_0.693|GO:0022008_0.690|GO:0007166_0.689|GO:0051649_0.689|GO:0009653_0.688|GO:0010647_0.687|GO:0023056_0.687|GO:0009888_0.685|GO:0050793_0.685|GO:0030182_0.684|GO:0048699_0.684|GO:0048584_0.683|GO:0016192_0.682|GO:0030030_0.682|GO:0061024_0.682|GO:0120036_0.682|GO:0009967_0.681|GO:0048666_0.681|GO:0009790_0.680|GO:0045595_0.680|GO:0048646_0.679|GO:0016050_0.677|GO:0031175_0.677|GO:0060429_0.677|GO:0098657_0.676|GO:0000902_0.675|GO:0007417_0.675|GO:0009792_0.675|GO:0002009_0.674|GO:0007167_0.674|GO:0009887_0.674|GO:0010324_0.674|GO:0048729_0.674|GO:0006900_0.673|GO:0007423_0.673|GO:0060322_0.673|GO:0001654_0.670|GO:0001700_0.670|GO:0001745_0.670|GO:0001751_0.670|GO:0001752_0.670|GO:0001754_0.670|GO:0006897_0.670|GO:0006898_0.670|GO:0007169_0.670|GO:0007349_0.670|GO:0007391_0.670|GO:0007409_0.670|GO:0007411_0.670|GO:0007420_0.670|GO:0007465_0.670|GO:0008045_0.670|GO:0016319_0.670|GO:0016331_0.670|GO:0030054_0.670|GO:0036465_0.670|GO:0042051_0.670|GO:0042461_0.670|GO:0042462_0.670|GO:0042706_0.670|GO:0045165_0.670|GO:0045202_0.670|GO:0045466_0.670|GO:0045500_0.670|GO:0045501_0.670|GO:0045664_0.670|GO:0045676_0.670|GO:0045874_0.670|GO:0046530_0.670|GO:0046532_0.670|GO:0046552_0.670|GO:0048488_0.670|GO:0048592_0.670|GO:0048598_0.670|GO:0048663_0.670|GO:0048667_0.670|GO:0048749_0.670|GO:0048812_0.670|GO:0048858_0.670|GO:0048880_0.670|GO:0061564_0.670|GO:0072583_0.670|GO:0090596_0.670|GO:0097485_0.670|GO:0098793_0.670|GO:0099003_0.670|GO:0099504_0.670|GO:0110116_0.670|GO:0120039_0.670|GO:0140238_0.670|GO:0150063_0.670|GO:0005102_0.665|GO:0060090_0.654|GO:0005118_0.650|GO:0030674_0.650|GO:0035591_0.650|GO:0005829_0.598|GO:0098590_0.573|GO:0042995_0.571|GO:0120025_0.569|GO:0043005_0.558|GO:0030424_0.549
|
IPR006020+112-169+|IPR011993+99-181+
|
— | — | — |
PTHR47695+113-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
35487.290
|
9.852
|
18.000
|
28.896
|
13.312
|
45.130
|
54.870
|
18.182
|
10.714
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
27.118
|
42.254
|
44.115
|
42.654
|
35.458
|
23.912
|
25.352
|
48.360
|
23.232
|
2.928
|
11.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.553
|
— |
0.908
|
-0.790
|
— | — | — | — | — |
No JSON data available for plots.