Hg_chrom1_TN10mRNA_526
Organism: Heterodera glycines Gene Locus: chr1:8380236-8387508 Feature type: polypeptideProtein Sequence
Length: 584
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.234 | 1.035 | 0.529 | 1.653 | 0.656 | 0.878 | 0.713 | 1.884 | 0.875 | 1.018 | 0.441 | 1.612 | 1.284 | 0.757 | 1.817 | 0.954 | 1.179 | 1.219 | 1.712 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_497
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KRVPLTLCCYAEVRRCRN
|
26-46
|
0.972
|
1-37
|
0.836
|
— | — |
0.000
|
— | — |
0.166
|
0.261
|
0.153
|
0.282
|
0.218
|
0.051
|
0.205
|
0.137
|
0.419
|
0.369
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005667
|
1.000
|
1.000
|
Hsc_gene_16197.t1
|
— | — |
P98081.2 Protein disabled [Drosophila melanogaster]
|
KAI1727446.1 phosphotyrosine interaction domain (PTB/PID) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.872|GO:0008150_0.847|GO:0003674_0.776|GO:0009987_0.774|GO:0005622_0.733|GO:0050896_0.699|GO:0016020_0.692|GO:0032501_0.685|GO:0005488_0.666|GO:0032502_0.666|GO:0048856_0.666|GO:0005515_0.628|GO:0005737_0.611|GO:0065007_0.611|GO:0030154_0.610|GO:0048869_0.610|GO:0050789_0.595|GO:0050794_0.577|GO:0051716_0.543|GO:0007275_0.534|GO:0048731_0.525|GO:0007154_0.524|GO:0051179_0.519|GO:0023052_0.516|GO:0048518_0.513|GO:0016043_0.504|GO:0071840_0.504|GO:0007165_0.502|GO:0048522_0.502
|
IPR006020+316-350+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
64998.980
|
9.511
|
40.000
|
22.432
|
11.986
|
44.178
|
55.822
|
15.582
|
6.849
|
54.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
saddlebrown
|
240.828
|
167.893
|
301.181
|
232.710
|
184.694
|
181.405
|
103.652
|
211.116
|
174.739
|
404.076
|
305.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
0.334
|
-0.263
|
-0.366
|
— |
-0.796
|
— |
-0.884
|
— | — | — | — | — |
No JSON data available for plots.