Hg_chrom1_TN10mRNA_53
Organism: Heterodera glycines Gene Locus: chr1:412606-419511 Feature type: polypeptideProtein Sequence
Length: 627
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.076 | 0.522 | 0.99 | 0.691 | 1.677 | 0.589 | 1.435 | 0.957 | 1.573 | 0.58 | 2.158 | 1.595 | 0.828 | 0.716 | 1.003 | 1.229 | 1.063 | 0.736 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_52
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.129
|
0.018
|
0.122
|
0.219
|
0.325
|
0.222
|
0.035
|
0.839
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002863
|
1.000
|
2.000
|
Hsc_gene_9585.t1;Hsc_gene_9587.t1
|
Hsc_gene_9585.t1;Hsc_gene_9587.t1
|
— |
P34311.3 Probable G-protein coupled receptor C06G4.5 [Caenorhabditis elegans]
|
KAI3411033.1 7 transmembrane receptor (rhodopsin) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.948|GO:0009987_0.923|GO:0065007_0.875|GO:0050789_0.864|GO:0050794_0.841|GO:0003674_0.836|GO:0050896_0.832|GO:0005575_0.805|GO:0110165_0.803|GO:0051716_0.793|GO:0007154_0.775|GO:0023052_0.775|GO:0007165_0.742|GO:0016020_0.691|GO:0004888_0.671|GO:0038023_0.671|GO:0060089_0.671|GO:0007186_0.667|GO:0005886_0.640|GO:0071944_0.640|GO:0004930_0.566|GO:0005488_0.565
|
IPR000276+71-95_86-360_108-129_152-174_158-174_249-272_296-320_342-368+|IPR017452+86-360+
|
— |
PF00001+86-360+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+60-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
486-627
|
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
69869.900
|
7.688
|
11.000
|
17.225
|
12.600
|
42.903
|
57.097
|
10.207
|
7.018
|
49.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1304.170
|
54.906
|
188.299
|
106.076
|
36.937
|
32.703
|
144.320
|
139.613
|
23.060
|
5424.879
|
3109.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.551
|
0.813
|
-0.721
|
-1.555
|
— |
2.151
|
1.993
|
— |
-5.678
|
— |
-4.772
|
— | — |
No JSON data available for plots.