Hg_chrom1_TN10mRNA_545
Organism: Heterodera glycines Gene Locus: chr1:8507055-8508722 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.482 | 1.511 | 0.382 | 1.016 | 0.781 | 0.495 | 1.108 | 1.539 | 1.16 | 0.881 | 0.978 | 1.693 | 1.225 | 1.3 | 0.831 | 0.863 | 0.755 | 2.557 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_516
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.614
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.608
|
0.331
|
0.049
|
0.498
|
0.137
|
0.059
|
0.074
|
0.019
|
0.266
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000008
|
59.000
|
13.000
|
Hsc_gene_11034.t1;Hsc_gene_12617.t1;Hsc_gene_14779.t1;Hsc_gene_16431.t1;Hsc_gene_17790.t1;Hsc_gene_20442.t1;Hsc_gene_20467.t1;Hsc_gene_20494.t1;Hsc_gene_25465.t1;Hsc_gene_26541.t1;Hsc_gene_3010.t1;Hsc_gene_3536.t1;Hsc_gene_9380.t1
|
Hsc_gene_2299.t1;Hsc_gene_23762.t1;Hsc_gene_23763.t1
|
— | — |
KAI3421888.1 hypothetical protein GPALN_012431 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
335-361
|
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
41922.510
|
5.678
|
-4.000
|
28.809
|
13.573
|
49.307
|
50.693
|
14.404
|
14.404
|
47.922
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
81.622
|
4.198
|
9.424
|
16.169
|
22.406
|
11.558
|
17.577
|
19.712
|
19.812
|
304.344
|
182.402
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.807
|
0.887
|
— |
-0.942
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.