Hg_chrom1_TN10mRNA_548
Organism: Heterodera glycines Gene Locus: chr1:8515457-8516185 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.431 | 1.958 | 0.265 | 0.897 | 1.381 | 0.549 | 1.538 | 1.709 | 1.559 | 0.466 | 0.905 | 1.496 | 1.183 | 1.413 | 0.44 | 0.378 | 0.932 | 2.367 | 0.226 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_519
|
— | — |
2.000
|
1.000
|
2.000
|
3.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
39-59
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.625
|
0.529
|
0.006
|
0.572
|
0.090
|
0.083
|
0.058
|
0.031
|
0.069
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000047
|
1.000
|
23.000
|
Hsc_gene_11497.t1;Hsc_gene_11508.t1;Hsc_gene_11865.t1;Hsc_gene_13238.t1;Hsc_gene_13240.t1;Hsc_gene_16428.t1;Hsc_gene_16445.t1;Hsc_gene_16445.t2;Hsc_gene_16445.t3;Hsc_gene_17514.t1;Hsc_gene_17783.t1;Hsc_gene_17849.t1;Hsc_gene_17849.t2;Hsc_gene_20655.t1;Hsc_gene_2172.t1;Hsc_gene_2817.t1;Hsc_gene_4028.t1;Hsc_gene_4028.t2;Hsc_gene_7677.t1;Hsc_gene_7677.t2;Hsc_gene_7890.t1;Hsc_gene_7890.t2;Hsc_gene_9571.t1
|
— | — | — |
KAI3411123.1 hypothetical protein GPALN_003206 [Globodera pallida]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
15075.100
|
4.606
|
-6.000
|
29.231
|
12.308
|
46.154
|
53.846
|
13.077
|
16.154
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.395
|
0.616
|
0.901
|
3.233
|
2.827
|
2.275
|
0.205
|
6.218
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.258
|
1.975
|
— | — | — | — |
-4.778
|
— | — | — | — | — |
No JSON data available for plots.